Botany · Molecular Basis of Inheritance

Regulation of Gene Expression — Lac Operon

Gene expression can be regulated at several levels, but in bacteria the rate of transcriptional initiation is the principal control point. The lac operon — worked out by François Jacob and Jacques Monod — is the prototype transcriptionally regulated system. NEET asks it almost every year through gene–product matching, inducer identification and the on/off switching logic, so a clear grasp of each component pays.

NCERT grounding

NCERT Class 12 Biology, Chapter 5, places this topic in section 5.8, Regulation of Gene Expression. The text first establishes that gene expression — which results in the formation of a polypeptide — can be regulated at several levels: transcriptional, processing, transport of mRNA, and translational. It then states the decisive point for bacteria: in prokaryotes, control of the rate of transcriptional initiation is the predominant site for control of gene expression. The activity of RNA polymerase at a promoter is regulated by accessory proteins that act positively (activators) or negatively (repressors).

Section 5.8.1 then introduces the worked example: the lac operon, elucidated by the geneticist François Jacob and the biochemist Jacques Monod, who were the first to elucidate a transcriptionally regulated system. The NIOS supplement (Chapter 23) reinforces this, describing the lac operon as an inducible system switched on in the presence of the substrate lactose. Both texts agree on the genes, the products and the logic — this page goes deeper on each.

“The operator region is adjacent to the promoter elements in most operons and in most cases the sequences of the operator bind a repressor protein. Each operon has its specific operator and specific repressor.” — NCERT Class 12 Biology, Section 5.8.

The lac operon — components and switching logic

An operon is a cluster of genes in bacteria in which a polycistronic structural gene is regulated by a common promoter and regulatory genes. This arrangement is very common in bacteria — examples include the lac operon, trp operon, ara operon, his operon and val operon. The lac operon (here lac refers to lactose) controls the genes responsible for the metabolism of the disaccharide lactose in Escherichia coli. Because all the genes needed for one metabolic task are transcribed together as a single unit, the bacterium can switch an entire pathway on or off with one molecular decision.

The lac operon consists of one regulatory gene (the i gene) and three structural genes (z, y and a), flanked and controlled by a promoter and an operator. The i gene lies a little upstream and carries its own promoter; the structural genes z, y and a lie in sequence downstream of the operator. Understanding each component in isolation is the foundation for understanding how the switch works.

The regulatory machinery — i gene, promoter, operator

The i gene is the regulatory gene. NCERT is explicit that here the term i does not refer to inducer — it is derived from the word inhibitor. The i gene codes for the repressor of the lac operon. The repressor is a protein that, when active, prevents transcription. The promoter (p) is the DNA sequence that provides the binding site for RNA polymerase; it is the landing strip the enzyme must occupy before it can begin transcription. The operator (o) is a short DNA sequence located adjacent to the promoter; it is the specific site that binds the repressor protein. NCERT stresses that the lac operator is present only in the lac operon and interacts specifically with the lac repressor only — each operon has its own matched operator–repressor pair.

Figure 1 Gene map of the lac operon i gene regulatory gene → repressor p promoter o operator z gene y gene a gene three structural genes (polycistronic) UPSTREAM (5′) DOWNSTREAM (3′)

Figure 1. The lac operon map: the i gene (with its own promoter) lies upstream; the operon promoter p and operator o sit just before the three structural genes z, y and a, which are transcribed together as one polycistronic mRNA.

The structural genes — z, y and a

The three structural genes encode the proteins that actually do the work of lactose metabolism. NCERT notes that all three gene products in the lac operon are required for the metabolism of lactose, and that in most operons the genes function in the same or a related metabolic pathway.

Memory hook: the structural genes run in the order z → y → a; the i gene is separate and regulatory. Match each letter to its product before exam day — this is a recurring NEET item.

z gene

β-galactosidase

also written β-gal

Hydrolyses the disaccharide lactose into its monomers galactose and glucose.

y gene

Permease

membrane transport

Increases the permeability of the cell to β-galactosides, allowing lactose to enter.

a gene

Transacetylase

accessory enzyme

Encodes a transacetylase; like z and y its product is needed for lactose metabolism.

Notice the dual role of lactose. It is the substrate of β-galactosidase, the enzyme that breaks it apart. It is also the inducer — the molecule that regulates switching the operon on and off. NCERT phrases this elegantly: regulation of the lac operon can be visualised as regulation of enzyme synthesis by its substrate. The cell makes the lactose-digesting enzymes only when lactose is around to digest.

3 + 1

Genes of the lac operon

Three structural genes (z, y, a) for the lactose-metabolising proteins, plus one regulatory gene (i) for the repressor — all governed by a single promoter and operator.

The OFF state — operon repressed

The repressor of the operon is synthesised all the time — constitutively — from the i gene. In the absence of lactose, this repressor protein binds the operator region of the operon. With the repressor sitting on the operator, RNA polymerase is physically blocked from transcribing the operon. No functional polycistronic mRNA is made, so no β-galactosidase, permease or transacetylase is produced. The operon is OFF. This is the default, resting state: with no lactose to metabolise, the bacterium does not waste energy making enzymes it cannot use.

The ON state — operon induced

When a preferred carbon source such as glucose is absent and lactose is supplied in the growth medium, lactose is transported into the cell through the action of permease. NCERT inserts an important caveat here: a very low level of expression of the lac operon must be present in the cell all the time, otherwise lactose cannot enter the cells at all. That basal trickle of permease admits the first lactose molecules. Once inside, lactose — or its isomer allolactose — acts as the inducer. The inducer binds the repressor protein and inactivates it by interaction. The inactivated repressor changes shape and can no longer hold the operator.

With the operator now free, RNA polymerase gains access to the promoter and transcription proceeds. The polycistronic mRNA for z, y and a is produced, the three enzymes are synthesised, and lactose metabolism begins. The operon is ON. Because the regulatory protein here is a repressor whose default action is to switch the operon off, NCERT classifies this as negative regulation — the operon turns on only when the negative control is lifted.

Lac operon — two states of the switch

Lactose ABSENT

OFF

operon repressed

  • Repressor (from i gene) is active.
  • Repressor binds the operator.
  • RNA polymerase is blocked from the promoter.
  • No transcription of z, y, a.
  • No β-galactosidase, permease or transacetylase made.

Lactose PRESENT

ON

operon induced

  • Lactose (inducer) binds and inactivates the repressor.
  • Operator is freed of the repressor.
  • RNA polymerase accesses the promoter.
  • Transcription of z, y, a proceeds.
  • The three enzymes are synthesised; lactose is metabolised.

The switch is reversible. As lactose is consumed and broken down by β-galactosidase, the level of inducer falls. With little or no lactose left, free active repressor again binds the operator, RNA polymerase is blocked once more, and the operon shuts back down. This is the answer to the classic NCERT question of why the lac operon shuts down some time after lactose is added: the operon stays on only as long as the inducer is present.

Figure 2 On and off states of the lac operon LACTOSE ABSENT — OPERON OFF LACTOSE PRESENT — OPERON ON p o z y a REPRES- SOR RNA pol blocked ✗ no mRNA p o z y a repressor lac inactivated RNA pol mRNA → enzymes

Figure 2. The switch. Top: with no lactose, the active repressor binds the operator and blocks RNA polymerase — OFF. Bottom: lactose binds and inactivates the repressor, freeing the operator so RNA polymerase transcribes z, y and a — ON.

The induction sequence, step by step

The full sequence of induction is best read as an ordered chain of events. Each step depends on the one before it, which is why a single missing component — say, a permease defect — can break the whole response.

Switching the lac operon ON

negative regulation — induction
  1. Step 1

    Lactose enters

    Basal permease admits lactose into the cell from the medium.

  2. Step 2

    Inducer binds repressor

    Lactose (or allolactose) binds the repressor protein made by the i gene.

  3. Step 3

    Repressor inactivated

    The repressor changes shape and can no longer hold the operator.

  4. Step 4

    Operator freed

    RNA polymerase gains access to the promoter; transcription proceeds.

  5. Step 5

    Enzymes made

    z, y, a are transcribed and translated; lactose is metabolised.

Two restrictions are worth fixing firmly. First, glucose and galactose cannot act as inducers of the lac operon — only lactose and allolactose can. This is why the products of lactose breakdown do not keep the operon running. Second, the lac operon, although the textbook example of negative regulation, is also under positive regulation; NCERT states this plainly but notes that positive control is beyond the scope of discussion at this level. For NEET, the negative-regulation account above is the examinable one.

“Essentially, regulation of the lac operon can also be visualised as regulation of enzyme synthesis by its substrate.”

NCERT Class 12 Biology · Section 5.8.1

Why the operon design is efficient

Transcription and translation are energetically very expensive processes, so they must be tightly regulated. The operon design solves this elegantly for the bacterium. By grouping z, y and a under a single promoter and operator, the cell can make one decision — repressor on the operator or off it — and have that decision govern an entire metabolic pathway at once. The genes are co-transcribed into a single polycistronic mRNA, so the enzymes appear together, in the right proportions, exactly when lactose is available and not before. When lactose runs out, the same single switch shuts the whole pathway down. This coupling of a metabolic need to a single transcriptional control point is why the lac operon became the prototype for understanding gene regulation in all bacteria.

Worked examples

Worked example 1

In the lac operon, which gene codes for the repressor protein, and why is it not called the inducer gene?

The i gene codes for the repressor protein. NCERT states explicitly that the term i is derived from the word inhibitor, not inducer. The repressor inhibits transcription by binding the operator. The inducer is a different entity altogether — it is lactose (or allolactose), the substrate. So the i gene makes the molecule that switches the operon OFF, while the inducer is what switches it ON.

Worked example 2

A mutant E. coli has a non-functional y gene. Lactose is added to the medium. Predict whether the operon can be induced.

The y gene codes for permease, which lets lactose enter the cell. With a non-functional y gene there is no permease, so lactose cannot be transported in. Since the inducer must be inside the cell to bind and inactivate the repressor, induction effectively fails. This illustrates why NCERT insists that a very low basal level of lac operon expression — and hence a little permease — must always be present for lactose to get in at all.

Worked example 3

Explain why the lac operon shuts down some time after lactose is added to the medium.

Lactose acts as the inducer that keeps the repressor inactivated. As the operon runs, β-galactosidase (the z gene product) hydrolyses lactose into galactose and glucose. Over time the lactose is consumed and the inducer level falls. Since glucose and galactose cannot act as inducers, the repressor is no longer inactivated; free active repressor binds the operator again, RNA polymerase is blocked, and transcription stops. The operon switches OFF.

Worked example 4

Match the lac operon genes with their products: (a) i gene, (b) z gene, (c) y gene, (d) a gene.

(a) i gene → repressor; (b) z gene → β-galactosidase (splits lactose into galactose + glucose); (c) y gene → permease (increases lactose uptake); (d) a gene → transacetylase. The i gene product is regulatory; the z, y and a products are all required for lactose metabolism.

Common confusion & NEET traps

The lac operon is dense with paired terms that are easy to swap under exam pressure — i vs inducer, repressor vs operator, structural vs regulatory genes. The cluster below isolates the errors NEET exploits most.

NEET PYQ Snapshot — Regulation of Gene Expression — Lac Operon

Real NEET questions on the lac operon, its components and inducer.

NEET 2016

Which of the following is required as inducer(s) for the expression of the lac operon?

  1. galactose
  2. lactose
  3. lactose and galactose
  4. glucose
Answer: (2)

Why: Lactose is the inducer of the lac operon. It binds and inactivates the repressor. Glucose and galactose cannot act as inducers — they are distractors.

NEET 2019

Match the following genes of the lac operon with their respective products: (a) i gene — (i) β-galactosidase; (b) z gene — (ii) Permease; (c) a gene — (iii) Repressor; (d) y gene — (iv) Transacetylase. Select the correct option.

  1. (a)-(i), (b)-(iii), (c)-(ii), (d)-(iv)
  2. (a)-(iii), (b)-(i), (c)-(ii), (d)-(iv)
  3. (a)-(iii), (b)-(i), (c)-(iv), (d)-(ii)
  4. (a)-(iii), (b)-(iv), (c)-(i), (d)-(ii)
Answer: (3)

Why: i gene → repressor; z gene → β-galactosidase; y gene → permease; a gene → transacetylase. Only option (3) matches all four correctly.

NEET 2018

All of the following are part of an operon except:

  1. an operator
  2. structural genes
  3. an enhancer
  4. a promoter
Answer: (3)

Why: An operon includes the regulatory gene, promoter, operator and structural genes. An enhancer is a eukaryotic regulatory element and is not a component of an operon.

NEET 2018

Select the correct match:

  1. Alec Jeffreys : Streptococcus pneumoniae
  2. Alfred Hershey and Martha Chase : TMV
  3. Matthew Meselson and F. Stahl : Pisum sativum
  4. François Jacob and Jacques Monod : Lac operon
Answer: (4)

Why: François Jacob and Jacques Monod elucidated the lac operon, the first transcriptionally regulated system to be worked out. The other three pairings are incorrect.

FAQs — Regulation of Gene Expression — Lac Operon

Common doubts on lac operon components and switching logic.

Why is the i gene called the inhibitor gene and not the inducer gene?

In the lac operon the i gene is named after the word inhibitor, not inducer. It codes for the repressor protein, which inhibits transcription by binding the operator. The inducer is a separate entity — it is lactose (or allolactose), the substrate, not a gene. Confusing i for inducer is a common error; the i gene product blocks the operon, while the inducer switches it on.

What are the three structural genes of the lac operon and what does each code for?

The lac operon has three structural genes — z, y and a. The z gene codes for beta-galactosidase, which hydrolyses lactose into galactose and glucose. The y gene codes for permease, which increases the permeability of the cell to beta-galactosides so lactose can enter. The a gene codes for a transacetylase. All three products are required for the metabolism of lactose.

How does the lac operon switch ON when lactose is present?

The repressor protein is made constitutively from the i gene. When lactose enters the cell it acts as an inducer — it binds the repressor and inactivates it by interaction. The inactivated repressor can no longer hold the operator, so the operator is freed, RNA polymerase gains access to the promoter, and transcription of z, y and a proceeds. The operon is thus switched ON.

Why is regulation of the lac operon called negative regulation?

Regulation of the lac operon by the repressor is called negative regulation because the default action of the regulatory protein is to switch the operon OFF. The repressor is a negative controller — it blocks transcription. The operon turns on only when this negative control is lifted by the inducer. NCERT notes that the lac operon is also under positive regulation, but that is beyond the scope at this level.

Why must a low level of lac operon expression exist even without lactose?

Lactose can only enter the cell through permease, the product of the y gene. If the operon were completely silent, no permease would exist and lactose could never get in to act as an inducer. So a very low basal level of lac operon expression is always present, providing just enough permease to admit the first lactose molecules that then induce the operon fully.

Can glucose or galactose act as inducers of the lac operon?

No. Only lactose (and allolactose) acts as the inducer of the lac operon. Glucose and galactose — the products of lactose hydrolysis — cannot induce the operon. This is why the operon shuts down once lactose is exhausted: with no inducer left, the repressor again binds the operator and transcription stops.